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26370 FoundationOne CDx

FoundationOne CDx
Test Code: FND1CSO
Synonyms/Keywords

​Solid Tumors

FFPE

Formalin-fixed paraffin embedded

Tumor Mutational Burden (TMB)

Microsatellite Instability (MSI)

Test Components

​Includes results from genomic signatures:

• Tumor Mutational Burden (TMB)

• Microsatellite Instability (MSI)

Useful For

​FoundationOne®CDx (F1CDx) is a qualitative next generation sequencing based in vitro diagnostic test that uses targeted high throughput hybridization-based capture technology for detection of substitutions, insertion and deletion alterations (indels), and copy number alterations (CNAs) in 324 genes and select gene rearrangements, as well as genomic signatures including microsatellite instability (MSI) and tumor mutational burden (TMB) using DNA isolated from formalin-fixed paraffin embedded (FFPE) tumor tissue specimens.  Additionally, F1CDx is intended to provide tumor mutation profiling to be used by qualified health care professionals in accordance with professional guidelines in oncology for patients with solid malignant neoplasms.

Specimen Requirements
Fasting RequiredSpecimen TypePreferred Container/Tube
​No​Varies

​FoundationOne CDx Kit: Supplied in Specimen Lab Processing Department.

Refer to the Kit and the Collection Processing Instructions (below).

Collection Processing Instructions

​Acceptable Samples:  Formalin-fixed paraffin embedded (FFPE) specimens, including cut slide specimens.  Use standard fixation methods to preserve nucleic acid integrity. 10% neutral-buffered formalin for 6-72 hours is industry standard. DO NOT use other fixatives (Bouins, B5, AZF, Holland's). DO NOT decalcify. 

When feasible, send the block + 1 H&E slide OR 10 unstained slides (positively charged and unbaked at 4-5 microns thick) + 1 H&E slide.

Surface area minimum: 25 mm2 (5 x 5 mm).  If sending slides, send 10 unstained slides cut at 4-5 microns thick to achieve a tissue volume of 1 mm3.  Specimens with smaller surface area may meet volume requirements by submitting additional unstained slides or blocks.    

Required Tumor Content:  OPTIMUM: 30% TN;     MINIMUM: 20% TN

Percent tumor nuclei (%TN) = number of tumor cells divided by total number of all cells with nuclei.

*NOTE for liver specimens: higher tumor content may be required because hepatocyte nuclei have twice the DNA content of other somatic nuclei.

Acceptable Specimen Types

​Formalin-fixed paraffin embedded (FFPE) specimens, including cut slide specimens.

Specimen Stability Information

Refer to Kit and Collection Processing Instructions

Rejection Criteria

Decalcified specimen

​Specimen fixed with Bouins, B5, AZF, Holland's fixative
Performing Laboratory Information
Performing LocationDay(s) Test PerformedAnalytical TimeMethodology/Instrumentation
Foundation Medicine, Inc   ​​Sunday through Saturday​14 days​Qualitative next generation sequencing
Reference Lab
Test Information

​FoundationOne CDx is the first FDA-approved tissue-based broad companion diagnostic (CDx) that is clinically and analytically validated for all solid tumors. The test is designed to provide physicians with clinically actionable information — both to consider appropriate therapies for patients and understand results with evidence of resistance — based on the individual genomic profile of each patient's cancer. 

 Test results include microsatellite instability (MSI) and tumor mutational burden (TMB) to help inform immunotherapy decisions, and loss of heterozygosity (LOH) for ovarian cancer patients.  Testing can be reflexed from FoundationOne CDx to FoundationOne®Liquid CDx if the tissue submitted does not meet the criteria for successful testing.

Reference Range Information

​An interpretive report will be provided

Interpretation

​​An interpretive report will be provided

Outreach CPTs
CPTModifier
(if needed)
QuantityDescriptionComments
0037U​​1​Targeted genomic sequence analysis, solid organ neoplasm, DNA analysis of 324 genes, interrogation for sequence variants, gene copy number amplifications, gene rearrangements, microsatellite instability and tumor mutational burden.
Synonyms/Keywords

​Solid Tumors

FFPE

Formalin-fixed paraffin embedded

Tumor Mutational Burden (TMB)

Microsatellite Instability (MSI)

Test Components

​Includes results from genomic signatures:

• Tumor Mutational Burden (TMB)

• Microsatellite Instability (MSI)

Ordering Applications
Ordering ApplicationDescription
COM​​FoundationOne CDx
​Cerner​FoundationOne CDx
If the ordering application you are looking for is not listed, contact your local laboratory for assistance.
Specimen Requirements
Fasting RequiredSpecimen TypePreferred Container/Tube
​No​Varies

​FoundationOne CDx Kit: Supplied in Specimen Lab Processing Department.

Refer to the Kit and the Collection Processing Instructions (below).

Collection Processing

​Acceptable Samples:  Formalin-fixed paraffin embedded (FFPE) specimens, including cut slide specimens.  Use standard fixation methods to preserve nucleic acid integrity. 10% neutral-buffered formalin for 6-72 hours is industry standard. DO NOT use other fixatives (Bouins, B5, AZF, Holland's). DO NOT decalcify. 

When feasible, send the block + 1 H&E slide OR 10 unstained slides (positively charged and unbaked at 4-5 microns thick) + 1 H&E slide.

Surface area minimum: 25 mm2 (5 x 5 mm).  If sending slides, send 10 unstained slides cut at 4-5 microns thick to achieve a tissue volume of 1 mm3.  Specimens with smaller surface area may meet volume requirements by submitting additional unstained slides or blocks.    

Required Tumor Content:  OPTIMUM: 30% TN;     MINIMUM: 20% TN

Percent tumor nuclei (%TN) = number of tumor cells divided by total number of all cells with nuclei.

*NOTE for liver specimens: higher tumor content may be required because hepatocyte nuclei have twice the DNA content of other somatic nuclei.

Acceptable Specimen Types

​Formalin-fixed paraffin embedded (FFPE) specimens, including cut slide specimens.

Specimen Stability Information

Refer to Kit and Collection Processing Instructions

Rejection Criteria

Decalcified specimen

​Specimen fixed with Bouins, B5, AZF, Holland's fixative
Useful For

​FoundationOne®CDx (F1CDx) is a qualitative next generation sequencing based in vitro diagnostic test that uses targeted high throughput hybridization-based capture technology for detection of substitutions, insertion and deletion alterations (indels), and copy number alterations (CNAs) in 324 genes and select gene rearrangements, as well as genomic signatures including microsatellite instability (MSI) and tumor mutational burden (TMB) using DNA isolated from formalin-fixed paraffin embedded (FFPE) tumor tissue specimens.  Additionally, F1CDx is intended to provide tumor mutation profiling to be used by qualified health care professionals in accordance with professional guidelines in oncology for patients with solid malignant neoplasms.

Test Components

​Includes results from genomic signatures:

• Tumor Mutational Burden (TMB)

• Microsatellite Instability (MSI)

Reference Range Information

​An interpretive report will be provided

Interpretation

​​An interpretive report will be provided

For more information visit:
Performing Laboratory Information
Performing LocationDay(s) Test PerformedAnalytical TimeMethodology/Instrumentation
Foundation Medicine, Inc   ​​Sunday through Saturday​14 days​Qualitative next generation sequencing
Reference Lab
For billing questions, see Contacts
Outreach CPTs
CPTModifier
(if needed)
QuantityDescriptionComments
0037U​​1​Targeted genomic sequence analysis, solid organ neoplasm, DNA analysis of 324 genes, interrogation for sequence variants, gene copy number amplifications, gene rearrangements, microsatellite instability and tumor mutational burden.
For most current information refer to the Marshfield Laboratory online reference manual.