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24890 EGFR with ALK Reflex, Tumor (EGFRR)

EGFR with ALK Reflex, Tumor (EGFRR)
Test Code: EGFRPSO
Synonyms/Keywords
​2p23, ALK, ALK Fish, ALK-EML4, EGFR, EGFR-TKI, EGFR-tyrosine kinase inhibitor, Epidermal growth factor receptor, Erlotinib, Gefitinib, Lung carcinoma, Non small cell lung cancer, Non-small cell lung cancer, NSCLC, EGFRX, T790M
Useful For

​Identifying non-small cell lung cancers that may benefit from treatment with epidermal growth factor receptor-tyrosine kinase or anaplastic lymphoma kinase inhibitors.

When this test is ordered, EGFR and LCAF testing will always be ordered. The  EGFR Gene, Mutation Analysis, 29 Mutation Panel, Tumor, will always be performed.  All specimens without an EGFR mutation will be automatically reflexed to LCAF/ALK (2p23), Lung Caner, FISH Tissue at an additional charge.  Specimens with an identified EGFR mutation will result in cancellation of the LCAF test.  When this test is ordered, slide review will always be performed at an additional charge.

Specimen Requirements
​Specimen Type ​Preferred Container/Tube ​Acceptable Container/Tube ​Specimen Volume ​Specimen Minimum Volume (allows for 1 repeat) ​Pediatric Minimum Volume (no repeat)
Tissue
​FFPE
tissue block
Slides ​​12 unstained, positively charged, unbaked slides or 2 H&E slides and 10 unstained, positively charged, unbaked slides with 5 micron thick sections of the tumor tissue ​2 H&E slides and 10 unstained, positively charged, unbaked slides with 5 micron thick sections of the tumor tissue
 
Collection Processing Instructions

Pathology report must accompany specimen in order for testing to be performed.

Specimen Stability Information
Specimen Type Temperature
Tissue ​Ambient (preferred)
​Frozen
​Refrigerated
Rejection Criteria

​Specimens that have been decalcified (all methods); specimens that have not been formalin-fixed, paraffin-embedded

Interference

A negative (wild-type) EGFR result does not rule out the presence of a mutation that may be present, but below the limits of detection for this assay (approximately 5%).

A negative (wild-type) EGFR result does not rule out the presence of other activating mutations in the EGFR gene.

Rare polymorphisms exist that could lead to false-negative or false-positive EGFR results.

The ALK FISH test (LCAF) is intended to be used for therapeutic purposes in pulmonary carcinoma. This FISH assay does not rule out other chromosome abnormalities.

While results of these tests may indicate the likely response to epidermal growth factor receptor (EGFR)-or anaplastic lymphoma kinase (ALK)-inhibitor therapies, selection of treatment remains a clinical decision.

Performing Laboratory Information
Performing Location Day(s) Test Performed Report Available Methodology/Instrumentation
Mayo Clinic Laboratories​
Monday through Friday​ 5 to 14 days Polymerase Chain Reaction (PCR) and Fluorescence In Situ Hybridization (FISH)
Reference Lab
Reference Range Information
An interpretive report will be provided.
Outreach CPTs
CPT Modifier
(if needed)
Quantity Description Comments
88381​ 1​ Manual Microdissection​
81235​ 1​ EGFR Mutation Analysis​
If ALK reflexed​ ​ ​ ​ ​
​88271 ​2 ​Cytogenetics DNA Probe
​88274 ​1 ​Cytogenetics 25-99
​88291 ​1 ​Cytogenetics Interp and Report
Synonyms/Keywords
​2p23, ALK, ALK Fish, ALK-EML4, EGFR, EGFR-TKI, EGFR-tyrosine kinase inhibitor, Epidermal growth factor receptor, Erlotinib, Gefitinib, Lung carcinoma, Non small cell lung cancer, Non-small cell lung cancer, NSCLC, EGFRX, T790M
Ordering Applications
Ordering Application Description
​Centricity ​EGFR Mutation Analysis
​Cerner None​
COM ​EGFR with ALK Reflex
If the ordering application you are looking for is not listed, contact your local laboratory for assistance.
Specimen Requirements
​Specimen Type ​Preferred Container/Tube ​Acceptable Container/Tube ​Specimen Volume ​Specimen Minimum Volume (allows for 1 repeat) ​Pediatric Minimum Volume (no repeat)
Tissue
​FFPE
tissue block
Slides ​​12 unstained, positively charged, unbaked slides or 2 H&E slides and 10 unstained, positively charged, unbaked slides with 5 micron thick sections of the tumor tissue ​2 H&E slides and 10 unstained, positively charged, unbaked slides with 5 micron thick sections of the tumor tissue
 
Collection Processing

Pathology report must accompany specimen in order for testing to be performed.

Specimen Stability Information
Specimen Type Temperature
Tissue ​Ambient (preferred)
​Frozen
​Refrigerated
Rejection Criteria

​Specimens that have been decalcified (all methods); specimens that have not been formalin-fixed, paraffin-embedded

Interference

A negative (wild-type) EGFR result does not rule out the presence of a mutation that may be present, but below the limits of detection for this assay (approximately 5%).

A negative (wild-type) EGFR result does not rule out the presence of other activating mutations in the EGFR gene.

Rare polymorphisms exist that could lead to false-negative or false-positive EGFR results.

The ALK FISH test (LCAF) is intended to be used for therapeutic purposes in pulmonary carcinoma. This FISH assay does not rule out other chromosome abnormalities.

While results of these tests may indicate the likely response to epidermal growth factor receptor (EGFR)-or anaplastic lymphoma kinase (ALK)-inhibitor therapies, selection of treatment remains a clinical decision.

Useful For

​Identifying non-small cell lung cancers that may benefit from treatment with epidermal growth factor receptor-tyrosine kinase or anaplastic lymphoma kinase inhibitors.

When this test is ordered, EGFR and LCAF testing will always be ordered. The  EGFR Gene, Mutation Analysis, 29 Mutation Panel, Tumor, will always be performed.  All specimens without an EGFR mutation will be automatically reflexed to LCAF/ALK (2p23), Lung Caner, FISH Tissue at an additional charge.  Specimens with an identified EGFR mutation will result in cancellation of the LCAF test.  When this test is ordered, slide review will always be performed at an additional charge.

Reference Range Information
An interpretive report will be provided.
For more information visit:
Performing Laboratory Information
Performing Location Day(s) Test Performed Report Available Methodology/Instrumentation
Mayo Clinic Laboratories​
Monday through Friday​ 5 to 14 days Polymerase Chain Reaction (PCR) and Fluorescence In Situ Hybridization (FISH)
Reference Lab
For billing questions, see Contacts
Outreach CPTs
CPT Modifier
(if needed)
Quantity Description Comments
88381​ 1​ Manual Microdissection​
81235​ 1​ EGFR Mutation Analysis​
If ALK reflexed​ ​ ​ ​ ​
​88271 ​2 ​Cytogenetics DNA Probe
​88274 ​1 ​Cytogenetics 25-99
​88291 ​1 ​Cytogenetics Interp and Report
For most current information refer to the Marshfield Laboratory online reference manual.